Jupyterlab anaconda: Difference between revisions
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Log into Jupyter Lab/Notebook you need to open | Log into Jupyter Lab/Notebook you need to open “''Anaconda prompt (anaconda3)”'' | ||
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It is necessary to open anaconda prompt first by searching in your desktop windows search bar | It is necessary to open anaconda prompt first by searching in your desktop windows search bar | ||
It looks like a regular terminal | It looks like a regular terminal | ||
|- | |- | ||
| | | <code>jupyter notebook</code> | ||
| Type this into the anaconda prompt/terminal and you should | | Type this into the anaconda prompt/terminal and you should | ||
|- | |- | ||
| | | <code>jupyter notebook --notebook-dir D:/MachineLearningPythonBiodegradation</code> | ||
| Because our directory fo jupyterlab isn’t where we want, I can specify which directory to open up and that is where my files can go. I am choosing this specific directory on my laptop since it is what I think is best. | | Because our directory fo jupyterlab isn’t where we want, I can specify which directory to open up and that is where my files can go. I am choosing this specific directory on my laptop since it is what I think is best. | ||
|- | |- | ||
| | | <code>jupyter lab --notebook-dir D:/MachineLearningPythonBiodegradation</code> | ||
| <br /> | | <br /> | ||
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| https://github.com/manuel-calzolari/sklearn-genetic | | https://github.com/manuel-calzolari/sklearn-genetic | ||
| <br /> | | <br /> | ||
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| | | <code>conda install -c conda-forge sklearn-genetic</code> | ||
| <br /> | | <br /> | ||
|- | |- | ||
| https://scikit-learn.org/stable/modules/generated/sklearn.linear_model.LinearRegression.html | | https://scikit-learn.org/stable/modules/generated/sklearn.linear_model.LinearRegression.html | ||
| <br /> | | <br /> | ||
|- | |- | ||
| https://docs.conda.io/projects/conda/en/latest/user-guide/install/linux.html | | https://docs.conda.io/projects/conda/en/latest/user-guide/install/linux.html | ||
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<code>bash Anaconda-latest-Linux-x86_64.sh</code> | |||
bash Anaconda-latest-Linux-x86_64.sh | |||
<br /> | <br /> | ||
| <br /> | | <br /> | ||
|- | |- | ||
| | | <code>eval "$(/gpfs1/home/meade.erickson/anaconda3/bin/conda shell.bash hook)"</code> | ||
| Used this to get conda to work in my environment | | Used this to get conda to work in my environment | ||
|- | |- | ||
| | | | ||
Using putty: <code>prime.ccast.ndsu.edu</code> | |||
prime.ccast.ndsu.edu | |||
| <br /> | | <br /> | ||
|- | |- | ||
| | | <code>ls -lisanh</code> | ||
| gives information on the files in whole directory | | gives information on the files in whole directory | ||
|- | |- | ||
| | | <code>ls -lisanh filename</code> | ||
| gives information on the specific file | | gives information on the specific file | ||
|- | |- | ||
| | | <code>ls -lisan</code> | ||
| gives information on the files in whole directory | | gives information on the files in whole directory | ||
|- | |- | ||
| | | <code>ls -lisan filename</code> | ||
| gives information on the specific file | | gives information on the specific file | ||
|- | |- | ||
| | | <code>babel –ixyz file.xyz –opdb file.pdb xyz to pdb</code> | ||
| | | | ||
Using babel, converts the input file of .xyz to outputfile of .pdb | Using babel, converts the input file of .xyz to outputfile of .pdb | ||
|} | |} | ||
<br /> | <br /> | ||
Latest revision as of 21:00, 26 September 2022
|
Log into Jupyter Lab/Notebook you need to open “Anaconda prompt (anaconda3)” |
It is necessary to open anaconda prompt first by searching in your desktop windows search bar It looks like a regular terminal |
jupyter notebook
|
Type this into the anaconda prompt/terminal and you should |
jupyter notebook --notebook-dir D:/MachineLearningPythonBiodegradation
|
Because our directory fo jupyterlab isn’t where we want, I can specify which directory to open up and that is where my files can go. I am choosing this specific directory on my laptop since it is what I think is best. |
jupyter lab --notebook-dir D:/MachineLearningPythonBiodegradation
|
|
| https://github.com/manuel-calzolari/sklearn-genetic | |
conda install -c conda-forge sklearn-genetic
|
|
| https://scikit-learn.org/stable/modules/generated/sklearn.linear_model.LinearRegression.html | |
| https://docs.conda.io/projects/conda/en/latest/user-guide/install/linux.html | |
|
|
|
eval "$(/gpfs1/home/meade.erickson/anaconda3/bin/conda shell.bash hook)"
|
Used this to get conda to work in my environment |
|
Using putty: |
|
ls -lisanh
|
gives information on the files in whole directory |
ls -lisanh filename
|
gives information on the specific file |
ls -lisan
|
gives information on the files in whole directory |
ls -lisan filename
|
gives information on the specific file |
babel –ixyz file.xyz –opdb file.pdb xyz to pdb
|
Using babel, converts the input file of .xyz to outputfile of .pdb |